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11 May 06 - 16:07Very useful plugins for FireFox

  • BioBar - aims at implementing various bioinformatics tools as an extension on the Mozilla based browsers.
  • BioFox - The biobar project is a bioinformatics power-browsing toolbar for Mozilla-based browsers including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, Proteomic, Functional, Literature, Taxonomic, Structural, Plant and Animal-specific databases. In addition to the browsing features, biobar also provides links to important bioinformatics sites and services including services at the European Bioinformatics Institute (EBI), National Center for Biotechnology Information (NCBI) and DNA Data Bank of Japan (DDBJ). The tool also provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the menu also contains links to many Sequence, Structure alignment and analysis tools. The latest release (Version 1.4) of biobar provides browsing access to over 46 different databases (including Google Scholar, HubMed, SCIRUS etc) (listed here). If you have downloaded,used and liked biobar, please spread the word by adding this icon to your webpage using the code below.

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11 May 06 - 15:58Sequence alignment tools

Local Alignment

Global Alignment

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11 May 06 - 15:40Notes 4/05/2006

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06 May 06 - 00:13Introduction to Biological Databases and Sequence Manipulation - Try and learn

An exercise proposed by Molecular Lab
Getting started: text queries in databases
File formats, text queries, simple sequence manipulation on the web.

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04 May 06 - 15:03Changing room again !!!!

Next lecture will be held at Mathematics department Aula I.

Please sign up for the authorization to use computers in Aula I at Department of mathematics as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Pino) at Department of mathematics.

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04 May 06 - 10:03Slides 27/04/2006

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04 May 06 - 09:45Secondary Databases

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04 May 06 - 09:35Primary Databases

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03 May 06 - 18:48DNA Sequence utilities

Dowload an EMBL DNA test Sequence

Dowload a FASTA DNA test Sequence

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