Teaching 2007-11-22T22:24:09+01:00 ezio http://www.eziobartocci.com/fodiinf06/index.php ezio.bartocci@unicam.it Fondamenti di Informatica I (Classe 1) e Informatica (Classe 6/S) tag:EzioBartocci\'sHomePage,2007:Teaching Pivot Copyright (c) 2007, Authors of Teaching RNA Folding Slides 2007-05-26T00:46:00+01:00 2007-05-26T00:46:00+01:00 2007-05-26T00:46:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.29 Lesson 25/05/2007 RNA Folding RNA Folding Slides
RNA Folding

]]> ezio.bartocci PDB for the exams 18 July 2006 2006-07-17T20:27:00+01:00 2006-07-17T20:27:00+01:00 2006-07-17T20:27:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.28 DNA Structure A DNADNA Structure B DNADNA Structure Z DNA PDB for the exams 18 July 2006
  • DNA Structure A DNA
  • DNA Structure B DNA
  • DNA Structure Z DNA

    ]]>     ezio.bartocci     Date for exams 2006-06-18T00:09:00+01:00 2006-06-18T00:09:00+01:00 2006-06-18T00:09:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.26 28 June 2006 - 10:00 am  Room I - Mathemathics Building (Book the exam, -writing me an email with your name and surname- at least a week before)18 July 2006 - 10:00 am  Room I - Mathemathics Building (Book the exam, -writing me an email with your name and surname- at least a week before) Date for exams
  • 28 June 2006 - 10:00 am Room I - Mathemathics Building
    (Book the exam, -writing me an email with your name and surname- at least a week before)
  • 18 July 2006 - 10:00 am Room I - Mathemathics Building
    (Book the exam, -writing me an email with your name and surname- at least a week before)
    • ]]>     ezio.bartocci     Practice 12 and 14 06 2006 2006-06-18T00:00:00+01:00 2006-06-18T00:00:00+01:00 2006-06-18T00:00:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.25 Click here to download practise notes Write me an e-mail for the authorization password Practice 12 and 14 06 2006 Click here to download practise notes
    Write me an e-mail for the authorization password

    ]]>     ezio.bartocci     Slides 15 06 2006 2006-06-15T10:42:00+01:00 2006-06-15T10:42:00+01:00 2006-06-15T10:42:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.24 Click here to download slides Write me an e-mail for the authorization password Slides 15 06 2006 Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     ezio.bartocci     Rasmol 2006-06-15T10:24:00+01:00 2006-06-15T10:24:00+01:00 2006-06-15T10:24:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.23    Download RasmolDownload HelpDNA A StructureDNA B StructureDNA Z StructureATP StructureHemoglobinTrypsin BTItRNA Rasmol
  • Download Rasmol
  • Download Help
  • DNA A Structure
  • DNA B Structure
  • DNA Z Structure
  • ATP Structure
  • Hemoglobin
  • Trypsin BTI
  • tRNA

    ]]>     ezio.bartocci     Next lessons 2006-06-07T17:40:00+01:00 2006-06-07T17:40:00+01:00 2006-06-07T17:40:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.22 Laurea Specialistica in Biologia Molecolare On Monday 12 June 2006 - 10:00-13:00  Aula LA2On Thursday 15 June 2006 - 10:00-13:00  Aula ILaurea Triennale in Biotecnologie On Wednesday 14 June 2006 - 15:00-17:00  Aula LA2On Thursday 15 June 2006 - 10:00-13:00  Aula I Next lessons

    On Monday 12 June 2006 - 10:00-13:00 Aula LA2
    On Thursday 15 June 2006 - 10:00-13:00 Aula I

    Laurea Triennale in Biotecnologie

    On Wednesday 14 June 2006 - 15:00-17:00 Aula LA2
    On Thursday 15 June 2006 - 10:00-13:00 Aula I ]]> ezio.bartocci Slides 11/05/2006 2006-06-07T17:35:00+01:00 2006-06-07T17:35:00+01:00 2006-06-07T17:35:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.21

    Click here to download slides Write me an e-mail for the authorization password Slides 11/05/2006 Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     ezio.bartocci     Very useful plugins for FireFox 2006-05-11T16:07:00+01:00 2006-05-11T16:07:00+01:00 2006-05-11T16:07:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.20 BioBar - aims at implementing various bioinformatics tools as an extension on the Mozilla based browsers.BioFox - The biobar project is a bioinformatics power-browsing toolbar for Mozilla-based browsers including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, Proteomic, Functional, Literature, Taxonomic, Structural, Plant and Animal-specific databases. In addition to the browsing features, biobar also provides links to important bioinformatics sites and services including services at the European Bioinformatics Institute (EBI), National Center for Biotechnology Information (NCBI) and DNA Data Bank of Japan (DDBJ). The tool also provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the menu also contains links to many Sequence, Structure alignment and analysis tools. The latest release (Version 1.4) of biobar provides browsing access to over 46 different databases (including Google Scholar, HubMed, SCIRUS etc) (listed here). If you have downloaded,used and liked biobar, please spread the word by adding this icon to your webpage using the code below. Very useful plugins for FireFox
  • BioBar - aims at implementing various bioinformatics tools as an extension on the Mozilla based browsers.
  • BioFox - The biobar project is a bioinformatics power-browsing toolbar for Mozilla-based browsers including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, Proteomic, Functional, Literature, Taxonomic, Structural, Plant and Animal-specific databases. In addition to the browsing features, biobar also provides links to important bioinformatics sites and services including services at the European Bioinformatics Institute (EBI), National Center for Biotechnology Information (NCBI) and DNA Data Bank of Japan (DDBJ). The tool also provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the menu also contains links to many Sequence, Structure alignment and analysis tools. The latest release (Version 1.4) of biobar provides browsing access to over 46 different databases (including Google Scholar, HubMed, SCIRUS etc) (listed here). If you have downloaded,used and liked biobar, please spread the word by adding this icon to your webpage using the code below.

    • ]]>     ezio.bartocci     Sequence alignment tools 2006-05-11T15:58:00+01:00 2006-05-11T15:58:00+01:00 2006-05-11T15:58:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.19 Local AlignmentBlast nucleotideBlast proteinTranslated BlastFastA by Virgina EduFastA by EBIGlobal AlignmentClustalW Sequence alignment tools Local Alignment

    Global Alignment

    ]]>     ezio.bartocci     Notes 4/05/2006 2006-05-11T15:40:00+01:00 2006-05-11T15:40:00+01:00 2006-05-11T15:40:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.18 Click here to download notes Write me an e-mail for the authorization password Notes 4/05/2006 Click here to download notes
    Write me an e-mail for the authorization password

    ]]>     ezio.bartocci     Introduction to Biological Databases and Sequence Manipulation - Try and learn 2006-05-06T00:13:00+01:00 2006-05-06T00:13:00+01:00 2006-05-06T00:13:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.17 An exercise proposed by Molecular LabGetting started: text queries in databasesFile formats, text queries, simple sequence manipulation on the web. Introduction to Biological Databases and Sequence Manipulation - Try and learn An exercise proposed by Molecular Lab
    Getting started: text queries in databases
    File formats, text queries, simple sequence manipulation on the web.

    ]]>     ezio.bartocci     Changing room again !!!! 2006-05-04T15:03:00+01:00 2006-05-04T15:03:00+01:00 2006-05-04T15:03:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.16 Next lecture will be held at Mathematics department Aula I. Please sign up for the authorization to use computers in Aula I at Department of mathematics as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Pino) at Department of mathematics. Changing room again !!!! Next lecture will be held at Mathematics department Aula I.

    Please sign up for the authorization to use computers in Aula I at Department of mathematics as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Pino) at Department of mathematics.

    ]]>     ezio.bartocci     Slides 27/04/2006 2006-05-04T10:03:00+01:00 2006-05-04T10:03:00+01:00 2006-05-04T10:03:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.15 Click here to download slides Write me an e-mail for the authorization password Slides 27/04/2006 Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     ezio.bartocci     Secondary Databases 2006-05-04T09:45:00+01:00 2006-05-04T09:45:00+01:00 2006-05-04T09:45:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.14 UniprotRefSeqSwiss-Prot (ExPASy)Protein Data Bank Secondary Databases
  • Uniprot
  • RefSeq
  • Swiss-Prot (ExPASy)
  • Protein Data Bank

    • ]]>     ezio.bartocci     Primary Databases 2006-05-04T09:35:00+01:00 2006-05-04T09:35:00+01:00 2006-05-04T09:35:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.13 DNA DataBase of JapanEMBL Nucleotide Sequence databaseGenBank Primary Databases
  • DNA DataBase of Japan
  • EMBL Nucleotide Sequence database
  • GenBank

    • ]]>     ezio.bartocci     DNA Sequence utilities 2006-05-03T18:48:00+01:00 2006-05-03T18:48:00+01:00 2006-05-03T18:48:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.12 Dowload an EMBL DNA test SequenceDowload a FASTA DNA test Sequence Convert a sequence (with readseq): change DNA/protein sequence to almost any format Shuffle a sequence: randomize a DNA/protein sequence to use as a statistical control Clean a sequence: remove numbers, spaces, and other non-sequence characters Reverse Complement ORF finder from NCBI Six frame translation Restriction Enzyme Map Analysis: Generate a map of enzyme sites Graphical Restriction Map:Create a graphical Restriction Map NEBcutter:Another tool for graphical Restriction Map Manipulate and Display a DNA sequence DNA Sequence utilities Dowload an EMBL DNA test Sequence

    Dowload a FASTA DNA test Sequence

    ]]>     ezio.bartocci     Getting the authorization to use computers in LA2 2006-04-25T01:47:00+01:00 2006-04-25T01:47:00+01:00 2006-04-25T01:47:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.10 Please sign up for the authorization to use computers in LA2 at "Polo d'Informatica" building as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Beatrice) of "Polo d'Informatica" building. Getting the authorization to use computers in LA2 Please sign up for the authorization to use computers in LA2 at "Polo d'Informatica" building as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Beatrice) of "Polo d'Informatica" building. ]]> ezio.bartocci Recommended Course Textbook 2006-04-25T00:36:00+01:00 2006-04-25T00:36:00+01:00 2006-04-25T00:36:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.8 Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition Andreas D. Baxevanis (Editor), B. F. Francis Ouellette (Editor), WileyIntroduzione alla Bioinformatica, Valle G., Helmer Citterich M., Attimonelli M., Pesole G., Zanichelli Recommended Course Textbook
    Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition Andreas D. Baxevanis (Editor), B. F. Francis Ouellette (Editor), Wiley
    Introduzione alla Bioinformatica, Valle G., Helmer Citterich M., Attimonelli M., Pesole G., Zanichelli

    ]]>     ezio.bartocci     General Course Information 2006-04-25T00:06:00+01:00 2006-04-25T00:06:00+01:00 2006-04-25T00:06:00+01:00 tag:EzioBartocci\'sHomePage,2007:Teaching.7 Lectures - Thursdays 10:00am-13:00amPlace - Room LA2 (Polo d’Informatica)Period - 19 April 2006 - 16 June 2006 General Course Information Lectures - Thursdays 10:00am-13:00am
    Place - Room LA2 (Polo d’Informatica)
    Period - 19 April 2006 - 16 June 2006

    ]]>     ezio.bartocci