Teaching http://www.eziobartocci.com/fodiinf06/index.php Fondamenti di Informatica I (Classe 1) e Informatica (Classe 6/S) eng_utf8 Copyright 2007 2007-11-22T22:24:09+01:00 hourly 1 2000-01-01T12:00+00:00 RNA Folding Slides http://www.eziobartocci.com/fodiinf06/archive/2007/05/26/RNA_Folding_Slides http://www.eziobartocci.com/fodiinf06/archive/2007/05/26/RNA_Folding_Slides#comm Lesson 25/05/2007 RNA Folding 29@http://www.eziobartocci.com/fodiinf06/
RNA Folding

]]> default 2007-05-26T00:46:00+01:00 PDB for the exams 18 July 2006 http://www.eziobartocci.com/fodiinf06/archive/2006/07/17/PDB_for_the_exams_18_July_2006 http://www.eziobartocci.com/fodiinf06/archive/2006/07/17/PDB_for_the_exams_18_July_2006#comm DNA Structure A DNADNA Structure B DNADNA Structure Z DNA 28@http://www.eziobartocci.com/fodiinf06/
  • DNA Structure A DNA
  • DNA Structure B DNA
  • DNA Structure Z DNA

    ]]>     default 2006-07-17T20:27:00+01:00     Date for exams http://www.eziobartocci.com/fodiinf06/archive/2006/06/18/Date_for_exams http://www.eziobartocci.com/fodiinf06/archive/2006/06/18/Date_for_exams#comm 28 June 2006 - 10:00 am  Room I - Mathemathics Building (Book the exam, -writing me an email with your name and surname- at least a week before)18 July 2006 - 10:00 am  Room I - Mathemathics Building (Book the exam, -writing me an email with your name and surname- at least a week before) 26@http://www.eziobartocci.com/fodiinf06/
  • 28 June 2006 - 10:00 am Room I - Mathemathics Building
    (Book the exam, -writing me an email with your name and surname- at least a week before)
  • 18 July 2006 - 10:00 am Room I - Mathemathics Building
    (Book the exam, -writing me an email with your name and surname- at least a week before)
    • ]]>     default 2006-06-18T00:09:00+01:00     Practice 12 and 14 06 2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/18/Practice_12_and_14_06_2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/18/Practice_12_and_14_06_2006#comm Click here to download practise notes Write me an e-mail for the authorization password 25@http://www.eziobartocci.com/fodiinf06/ Click here to download practise notes
    Write me an e-mail for the authorization password

    ]]>     default 2006-06-18T00:00:00+01:00     Slides 15 06 2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/15/Slides_15_06_2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/15/Slides_15_06_2006#comm Click here to download slides Write me an e-mail for the authorization password 24@http://www.eziobartocci.com/fodiinf06/ Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     default 2006-06-15T10:42:00+01:00     Rasmol http://www.eziobartocci.com/fodiinf06/archive/2006/06/15/Rasmol http://www.eziobartocci.com/fodiinf06/archive/2006/06/15/Rasmol#comm    Download RasmolDownload HelpDNA A StructureDNA B StructureDNA Z StructureATP StructureHemoglobinTrypsin BTItRNA 23@http://www.eziobartocci.com/fodiinf06/
  • Download Rasmol
  • Download Help
  • DNA A Structure
  • DNA B Structure
  • DNA Z Structure
  • ATP Structure
  • Hemoglobin
  • Trypsin BTI
  • tRNA

    ]]>     default 2006-06-15T10:24:00+01:00     Next lessons http://www.eziobartocci.com/fodiinf06/archive/2006/06/07/Next_lessons http://www.eziobartocci.com/fodiinf06/archive/2006/06/07/Next_lessons#comm Laurea Specialistica in Biologia Molecolare On Monday 12 June 2006 - 10:00-13:00  Aula LA2On Thursday 15 June 2006 - 10:00-13:00  Aula ILaurea Triennale in Biotecnologie On Wednesday 14 June 2006 - 15:00-17:00  Aula LA2On Thursday 15 June 2006 - 10:00-13:00  Aula I 22@http://www.eziobartocci.com/fodiinf06/

    On Monday 12 June 2006 - 10:00-13:00 Aula LA2
    On Thursday 15 June 2006 - 10:00-13:00 Aula I

    Laurea Triennale in Biotecnologie

    On Wednesday 14 June 2006 - 15:00-17:00 Aula LA2
    On Thursday 15 June 2006 - 10:00-13:00 Aula I ]]> default 2006-06-07T17:40:00+01:00 Slides 11/05/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/07/Slides_11/05/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/06/07/Slides_11/05/2006#comm Click here to download slides Write me an e-mail for the authorization password 21@http://www.eziobartocci.com/fodiinf06/ Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     default 2006-06-07T17:35:00+01:00     Very useful plugins for FireFox http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Very_useful_plugins_for_FireFo http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Very_useful_plugins_for_FireFo#comm BioBar - aims at implementing various bioinformatics tools as an extension on the Mozilla based browsers.BioFox - The biobar project is a bioinformatics power-browsing toolbar for Mozilla-based browsers including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, Proteomic, Functional, Literature, Taxonomic, Structural, Plant and Animal-specific databases. In addition to the browsing features, biobar also provides links to important bioinformatics sites and services including services at the European Bioinformatics Institute (EBI), National Center for Biotechnology Information (NCBI) and DNA Data Bank of Japan (DDBJ). The tool also provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the menu also contains links to many Sequence, Structure alignment and analysis tools. The latest release (Version 1.4) of biobar provides browsing access to over 46 different databases (including Google Scholar, HubMed, SCIRUS etc) (listed here). If you have downloaded,used and liked biobar, please spread the word by adding this icon to your webpage using the code below. 20@http://www.eziobartocci.com/fodiinf06/
  • BioBar - aims at implementing various bioinformatics tools as an extension on the Mozilla based browsers.
  • BioFox - The biobar project is a bioinformatics power-browsing toolbar for Mozilla-based browsers including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, Proteomic, Functional, Literature, Taxonomic, Structural, Plant and Animal-specific databases. In addition to the browsing features, biobar also provides links to important bioinformatics sites and services including services at the European Bioinformatics Institute (EBI), National Center for Biotechnology Information (NCBI) and DNA Data Bank of Japan (DDBJ). The tool also provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the menu also contains links to many Sequence, Structure alignment and analysis tools. The latest release (Version 1.4) of biobar provides browsing access to over 46 different databases (including Google Scholar, HubMed, SCIRUS etc) (listed here). If you have downloaded,used and liked biobar, please spread the word by adding this icon to your webpage using the code below.

    • ]]>     default 2006-05-11T16:07:00+01:00     Sequence alignment tools http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Sequence_alignment_tools http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Sequence_alignment_tools#comm Local AlignmentBlast nucleotideBlast proteinTranslated BlastFastA by Virgina EduFastA by EBIGlobal AlignmentClustalW 19@http://www.eziobartocci.com/fodiinf06/ Local Alignment

    Global Alignment

    ]]>     default 2006-05-11T15:58:00+01:00     Notes 4/05/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Notes_4/05/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/05/11/Notes_4/05/2006#comm Click here to download notes Write me an e-mail for the authorization password 18@http://www.eziobartocci.com/fodiinf06/ Click here to download notes
    Write me an e-mail for the authorization password

    ]]>     default 2006-05-11T15:40:00+01:00     Introduction to Biological Databases and Sequence Manipulation - Try and learn http://www.eziobartocci.com/fodiinf06/archive/2006/05/06/Introduction_to_Biological_Dat http://www.eziobartocci.com/fodiinf06/archive/2006/05/06/Introduction_to_Biological_Dat#comm An exercise proposed by Molecular LabGetting started: text queries in databasesFile formats, text queries, simple sequence manipulation on the web. 17@http://www.eziobartocci.com/fodiinf06/ An exercise proposed by Molecular Lab
    Getting started: text queries in databases
    File formats, text queries, simple sequence manipulation on the web.

    ]]>     default 2006-05-06T00:13:00+01:00     Changing room again !!!! http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Changing_room_again_!!!! http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Changing_room_again_!!!!#comm Next lecture will be held at Mathematics department Aula I. Please sign up for the authorization to use computers in Aula I at Department of mathematics as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Pino) at Department of mathematics. 16@http://www.eziobartocci.com/fodiinf06/ Next lecture will be held at Mathematics department Aula I.

    Please sign up for the authorization to use computers in Aula I at Department of mathematics as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Pino) at Department of mathematics.

    ]]>     default 2006-05-04T15:03:00+01:00     Slides 27/04/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Slides_27/04/2006 http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Slides_27/04/2006#comm Click here to download slides Write me an e-mail for the authorization password 15@http://www.eziobartocci.com/fodiinf06/ Click here to download slides
    Write me an e-mail for the authorization password

    ]]>     default 2006-05-04T10:03:00+01:00     Secondary Databases http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Secondary_Databases http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Secondary_Databases#comm UniprotRefSeqSwiss-Prot (ExPASy)Protein Data Bank 14@http://www.eziobartocci.com/fodiinf06/
  • Uniprot
  • RefSeq
  • Swiss-Prot (ExPASy)
  • Protein Data Bank

    • ]]>     default 2006-05-04T09:45:00+01:00     Primary Databases http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Primary_Databases http://www.eziobartocci.com/fodiinf06/archive/2006/05/04/Primary_Databases#comm DNA DataBase of JapanEMBL Nucleotide Sequence databaseGenBank 13@http://www.eziobartocci.com/fodiinf06/
  • DNA DataBase of Japan
  • EMBL Nucleotide Sequence database
  • GenBank

    • ]]>     default 2006-05-04T09:35:00+01:00     DNA Sequence utilities http://www.eziobartocci.com/fodiinf06/archive/2006/05/03/DNA_Sequence_utilities http://www.eziobartocci.com/fodiinf06/archive/2006/05/03/DNA_Sequence_utilities#comm Dowload an EMBL DNA test SequenceDowload a FASTA DNA test Sequence Convert a sequence (with readseq): change DNA/protein sequence to almost any format Shuffle a sequence: randomize a DNA/protein sequence to use as a statistical control Clean a sequence: remove numbers, spaces, and other non-sequence characters Reverse Complement ORF finder from NCBI Six frame translation Restriction Enzyme Map Analysis: Generate a map of enzyme sites Graphical Restriction Map:Create a graphical Restriction Map NEBcutter:Another tool for graphical Restriction Map Manipulate and Display a DNA sequence 12@http://www.eziobartocci.com/fodiinf06/ Dowload an EMBL DNA test Sequence

    Dowload a FASTA DNA test Sequence

    ]]>     default 2006-05-03T18:48:00+01:00     Getting the authorization to use computers in LA2 http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/Getting_the_authorization_to_u http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/Getting_the_authorization_to_u#comm Please sign up for the authorization to use computers in LA2 at "Polo d'Informatica" building as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Beatrice) of "Polo d'Informatica" building. 10@http://www.eziobartocci.com/fodiinf06/ Please sign up for the authorization to use computers in LA2 at "Polo d'Informatica" building as soon as possible. To do this, you have to request a form to be filled at janitor's lodge portineria in italian (ask to Beatrice) of "Polo d'Informatica" building. ]]> default 2006-04-25T01:47:00+01:00 Recommended Course Textbook http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/Recommended_Course_Textbook http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/Recommended_Course_Textbook#comm Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition Andreas D. Baxevanis (Editor), B. F. Francis Ouellette (Editor), WileyIntroduzione alla Bioinformatica, Valle G., Helmer Citterich M., Attimonelli M., Pesole G., Zanichelli 8@http://www.eziobartocci.com/fodiinf06/
    Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition Andreas D. Baxevanis (Editor), B. F. Francis Ouellette (Editor), Wiley
    Introduzione alla Bioinformatica, Valle G., Helmer Citterich M., Attimonelli M., Pesole G., Zanichelli

    ]]>     default 2006-04-25T00:36:00+01:00     General Course Information http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/General_Course_Information http://www.eziobartocci.com/fodiinf06/archive/2006/04/25/General_Course_Information#comm Lectures - Thursdays 10:00am-13:00amPlace - Room LA2 (Polo d’Informatica)Period - 19 April 2006 - 16 June 2006 7@http://www.eziobartocci.com/fodiinf06/ Lectures - Thursdays 10:00am-13:00am
    Place - Room LA2 (Polo d’Informatica)
    Period - 19 April 2006 - 16 June 2006

    ]]>     default 2006-04-25T00:06:00+01:00