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Last papers                             

Runtime Verification with State Estimation


Toward Realtime Simulation of Cardiac Dynamics


From Cardiac Cells to Genetic Regulatory Networks


Modeling the cell cycle: From deterministic models to hybrid systems


Model Repair for Probabilistic Systems


Curvature Analysis of Cardiac Excitation Wavefronts


Shape Calculus. A Spatial Mobile Calculus for 3D Shapes


Timed Operational Semantics and Well-Formedness of Shape Calculus


Shape Calculus: Timed Operational Semantics and Well-formedness


Detecting synchronisation of biological oscillators by model checking


A Resourceome for the Automation of In-silico Biological Experiments


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PhD Stuff

ADI - Italian PhD Association
Fullbright scolarships
Marie Curie Fellowship Association


My University

SUNY in Stony Brook
Applied Math and Statistics
Computer Science


My Current Research Projects

CMACS
CMACS (AFIB)
Survaivable Software

Old Projects

Resourceome
Oncology Over Internet
Litbio Project
Litbio CoSy Group
BioAgent Project
Hermes Project

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"Computers are incredibly fast, accurate, and stupid.
Human beings are incredibly slow, inaccurate, and brilliant.
Together they are powerful beyond imagination."

(Albert Einstein)


Supplement Material for the CAV2010 paper

Flavio's Fenton Minimal Conductance Model written in matlab (Single Cell): Minimal Resistor Model written in matlab (Single Cell):  single_cell_mrm4V.m (E. Bartocci)
Global Optimal Linear Approximation Algorithm: optimalLinearApproximation.m segmentErr.m (R. Grosu, E. Bartocci)
Segmentation of Mode 1: mode1segmentation.m Segmentation of Mode 2: mode2segmentation.m
Segmentation of Mode 3: mode3segmentation.m Segmentation of Mode 4: mode4segmentation.m
1D Cable Comparison among the Minimal Resistor Model and the Piecewise MultiAffine Model:
Comparison with a Stimulus every 100 ms Comparison with a Stimulus every 160 ms:
Comparison with a Stimulus every 200 ms Comparison with a Stimulus every 310 ms:
Restitution:
Rovergene for Mac (64 bit for Matlab2009R updated) (Author G. Batt): RoVerGeNeMac64BitMatLab2009R.zip
Model File for Rovergene: (Authors: E. Bartocci, G. Batt, Colas Le Guernic, R. Grosu): cell_model.txt
Simulator of Rovergene Cell Model: (Author: E. Bartocci): sim_cell_model.m
Analysis Results: analysis_result.txtKS_existsP.smvKS_forallP.smv



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